Cell line name | SK-NEP-1 | ||||||||||||||||||||||||||||||||||||
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Synonyms | SKNEP-1; SKNEP1; SKNEP | ||||||||||||||||||||||||||||||||||||
Accession | BTCC-1380 | ||||||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: SK-NEP-1 (BTCC-1380) | ||||||||||||||||||||||||||||||||||||
Comments | Problematic cell line: Misclassified. Originally thought to be a Wilm's tumor cell line but shown to be from an Ewing sarcoma (PubMed=17154184; PubMed=30924592). Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: MD Anderson Cell Lines Project. From: Memorial Sloan Kettering Cancer Center; New York; USA. Registration: Memorial Sloan Kettering Cancer Center Office of Technology Development; SK2008-052. Microsatellite instability: Stable (MSS) (Sanger). Omics: Deep exome analysis. Omics: DNA methylation analysis. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Pleural effusion; UBERON=UBERON_0000175. | ||||||||||||||||||||||||||||||||||||
Sequence variations |
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Genome ancestry | Source: PubMed=30894373
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Disease | Ewing sarcoma (NCIt: C4817) Ewing sarcoma (ORDO: Orphanet_319) | ||||||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||||||||||||||||||
Age at sampling | 25Y | ||||||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||||||
STR profile | Source(s): ATCC; CLS; Cosmic-CLP; PubMed=25010205 Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||||||
Web pages | https://www.mskcc.org/research-advantage/support/technology/tangible-material/sk-nep-1-human-ewing-sarcoma-cell-line https://tcpaportal.org/mclp/ | ||||||||||||||||||||||||||||||||||||
Publications | DOI=10.1007/978-1-4757-1647-4_5 PubMed=327080; DOI=10.1093/jnci/59.1.221 PubMed=833871; DOI=10.1093/jnci/58.2.209 PubMed=571047 PubMed=6244232 PubMed=7459858 PubMed=3518877; DOI=10.3109/07357908609038260 PubMed=17154184; DOI=10.1002/pbc.21099 PubMed=20164919; DOI=10.1038/nature08768 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458 PubMed=25010205; DOI=10.1371/journal.pgen.1004475 PubMed=28196595; DOI=10.1016/j.ccell.2017.01.005 PubMed=28489074; DOI=10.1038/ncomms15165 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747 PubMed=30924592; DOI=10.1002/pbc.27741 PubMed=31006967; DOI=10.1002/pbc.27769 PubMed=31068700; DOI=10.1038/s41586-019-1186-3 | ||||||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0009055 CLDB; cl4353 CCRID; 3101HUMTCHu164 Cell_Model_Passport; SIDM00027 Cosmic-CLP; 909730 DepMap; ACH-001192 IGRhCellID; SKNEP1 LINCS_LDP; LCL-1802 | ||||||||||||||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN03472745 BioSample; SAMN10989620 | ||||||||||||||||||||||||||||||||||||
Cell line collections (Providers) | ATCC; HTB-48 CLS; 300341 IZSLER; BS TCL 61 | ||||||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3308141 ChEMBL-Targets; CHEMBL1075580 GDSC; 909730 PharmacoDB; SKNEP1_1410_2019 PubChem_Cell_line; CVCL_0631 | ||||||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54954488 | ||||||||||||||||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0002337 |