Cell line name | Ca Ski | ||||||||||||||||||||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Synonyms | Ca-Ski; CaSki; Caski; CASKI | ||||||||||||||||||||||||||||||||||||
Accession | BTCC-1039 | ||||||||||||||||||||||||||||||||||||
Resource Identification Initiative | To cite this cell line use: Ca Ski (BTCC-1039) | ||||||||||||||||||||||||||||||||||||
Comments | Group: Space-flown cell line (cellonaut). Part of: Cancer Dependency Map project (DepMap) (includes Cancer Cell Line Encyclopedia - CCLE). Part of: COSMIC cell lines project. Part of: Naval Biosciences Laboratory (NBL) collection (transferred to ATCC in 1982). Population: Caucasian. Virology: Contains from 100 to 800 copies of the HPV16 genome; some complete and others truncated. Doubling time: 3.2 days (PubMed=29156801). Microsatellite instability: Stable (MSS) (Sanger). Transformant: NCBI_TaxID; 333760; Human papillomavirus type 16 (HPV16). Omics: CNV analysis. Omics: Deep exome analysis. Omics: Deep quantitative proteome analysis. Omics: DNA methylation analysis. Omics: Protein expression by reverse-phase protein arrays. Omics: SNP array analysis. Omics: Transcriptome analysis by microarray. Omics: Transcriptome analysis by RNAseq. Derived from site: Metastatic; Small intestine; UBERON=UBERON_0002108. | ||||||||||||||||||||||||||||||||||||
Sequence variations |
| ||||||||||||||||||||||||||||||||||||
HLA typing | Source: PubMed=26589293
| ||||||||||||||||||||||||||||||||||||
Genome ancestry | Source: PubMed=30894373
| ||||||||||||||||||||||||||||||||||||
Disease | Human papillomavirus-related cervical squamous cell carcinoma (NCIt: C27676) Squamous cell carcinoma of the cervix uteri (ORDO: Orphanet_213767) | ||||||||||||||||||||||||||||||||||||
Species of origin | Homo sapiens (Human) (NCBI Taxonomy: 9606) | ||||||||||||||||||||||||||||||||||||
Sex of cell | Female | ||||||||||||||||||||||||||||||||||||
Age at sampling | 40Y | ||||||||||||||||||||||||||||||||||||
Category | Cancer cell line | ||||||||||||||||||||||||||||||||||||
STR profile | Source(s): AddexBio; ATCC; CCRID; CLS; Cosmic-CLP; DepMap; ECACC; JCRB; KCLB; PubMed=25877200; PubMed=29156801; RCB; TKG Markers:
Run an STR similarity search on this cell line | ||||||||||||||||||||||||||||||||||||
Web pages | https://www.thermofisher.com/ch/en/home/technical-resources/cell-lines/c/cell-lines-detail-21.html | ||||||||||||||||||||||||||||||||||||
Publications | PubMed=867042; DOI=10.1126/science.867042 PubMed=2990217 PubMed=3029430; DOI=10.1128/JVI.61.4.962-971.1987 PubMed=3371749; DOI=10.1016/0090-8258(88)90029-7 PubMed=7751322; DOI=10.1007/BF01366967 CLPUB00481 PubMed=9887230; DOI=10.1006/gyno.1998.5194 PubMed=10423141; DOI=10.1099/0022-1317-80-7-1725 PubMed=15531914; DOI=10.1038/sj.onc.1208235 PubMed=17311676; DOI=10.1186/1471-2164-8-53 PubMed=17611311 PubMed=20164919; DOI=10.1038/nature08768 PubMed=20215515; DOI=10.1158/0008-5472.CAN-09-3458 PubMed=21439369; DOI=10.1016/j.mcp.2011.03.003 PubMed=24134916; DOI=10.1186/1755-8166-6-44 PubMed=24201445; DOI=10.1101/gr.164806.113 PubMed=25485619; DOI=10.1038/nbt.3080 PubMed=26589293; DOI=10.1186/s13073-015-0240-5 PubMed=27397505; DOI=10.1016/j.cell.2016.06.017 PubMed=29156801; DOI=10.18632/oncotarget.21174 PubMed=30894373; DOI=10.1158/0008-5472.CAN-18-2747 PubMed=35839778; DOI=10.1016/j.ccell.2022.06.010 | ||||||||||||||||||||||||||||||||||||
Cross-references | |||||||||||||||||||||||||||||||||||||
Cell line databases/resources | CLO; CLO_0002165 CLO; CLO_0002201 CLO; CLO_0050930 CLDB; cl603 CLDB; cl604 CLDB; cl605 CLDB; cl4940 CCRID; 1101HUM-PUMC000101 CCRID; 1102HUM-NIFDC00093 CCRID; 3101HUMTCHu137 CCRID; 4201HUM-CCTCC00111 Cell_Model_Passport; SIDM00923 Cosmic-CLP; 906824 DepMap; ACH-001336 IGRhCellID; CaSki%20GEO LINCS_HMS; 50006 LINCS_LDP; LCL-1541 Lonza; 1669 | ||||||||||||||||||||||||||||||||||||
Anatomy/cell type resources | BTO; BTO:0003109 | ||||||||||||||||||||||||||||||||||||
Biological sample resources | BioSample; SAMN01821540 BioSample; SAMN01821672 BioSample; SAMN01821725 BioSample; SAMN03473214 | ||||||||||||||||||||||||||||||||||||
Cell line collections (Providers) | AddexBio; C0008004/375 ATCC; CRL-1550 ATCC; CRM-CRL-1550 ATCC; CRL-7915 - Discontinued BCRC; 60251 CCTCC; GDC0111 CLS; 300145 ECACC; 87020501 IBRC; C10345 ICLC; HTL98018 IZSLER; BS TCL 201 JCRB; IFO50007 KCB; KCB 2013034YJ KCLB; 21550 RCB; RCB1947 TKG; TKG 0366 | ||||||||||||||||||||||||||||||||||||
Chemistry resources | ChEMBL-Cells; CHEMBL3308097 ChEMBL-Targets; CHEMBL1075403 GDSC; 906824 PharmacoDB; CaSki_158_2019 PubChem_Cell_line; CVCL_1100 | ||||||||||||||||||||||||||||||||||||
Encyclopedic resources | Wikidata; Q54808287 | ||||||||||||||||||||||||||||||||||||
Experimental variables resources | EFO; EFO_0006549 |